مشخصات پژوهش

صفحه نخست /Gene-Set Enrichment Analysis ...
عنوان
Gene-Set Enrichment Analysis for Identifying Genes and Biological Activities Associated with Growth Traits in Dromedaries
نوع پژوهش مقاله چاپ شده
کلیدواژه‌ها
growth; biological theme; gene ontology; dromedaries
چکیده
Growth is an important heritable economic trait for dromedaries and necessary for planning a successful breeding program. Until now, genome-wide association studies (GWAS) and QTLmapping have identified significant single nucleotide polymorphisms (SNPs) associated with growth in domestic animals, but in dromedaries, the number of studies is very low. This project aimed to find biological themes affecting growth in dromedaries. In the first step, 99 candidate SNPs were chosen from a previously established set of SNPs associated with body weight, gain, and birth weight in Iranian dromedaries. Next, 0.5 kb upstream and downstream of each candidate SNP were selected from NCBI (assembly accession: GCA_000803125.3). The annotation of fragments with candidate SNPs regarding the reference genome was retrieved using the Blast2GO tool. Candidate SNPs associated with growth were mapped to 22 genes, and 25 significant biological themes were identified to be related to growth in dromedaries. The main biological functions included calcium ion binding, protein binding, DNA-binding transcription factor activity, protein kinase activity, tropomyosin binding, myosin complex, actin-binding, ATP binding, receptor signaling pathway via JAK-STAT, and cytokine activity. EFCAB5, MTIF2, MYO3A, TBX15, IFNL3, PREX1, and TMOD3 genes are candidates for improving growth in camel breeding programs.
پژوهشگران مرتضی بیطرف (نفر اول)، زهرا رودباری (نفر دوم)، امید کریمی (نفر سوم)، محمدحسین بنابازی (نفر چهارم)، سعید اسماعیل خانیان (نفر پنجم)، نادر اسدزاده (نفر ششم به بعد)، جواد زارع (نفر ششم به بعد)، علی شفیعی نادری (نفر ششم به بعد)، پاملا برگر (نفر ششم به بعد)