01 آذر 1403
زهرا رودباري

زهرا رودباری

مرتبه علمی: دانشیار
نشانی: دانشگاه جیرفت
تحصیلات: دکترای تخصصی / علوم دامی
تلفن: 09132483343
دانشکده: دانشکده کشاورزی

مشخصات پژوهش

عنوان
Gene-Set Enrichment Analysis for Identifying Genes and Biological Activities Associated with Growth Traits in Dromedaries
نوع پژوهش مقاله چاپ شده
کلیدواژه‌ها
growth; biological theme; gene ontology; dromedaries
پژوهشگران مرتضی بیطرف، زهرا رودباری، امید کریمی، محمدحسین بنابازی، سعید اسماعیل خانیان، نادر اسدزاده، جواد زارع، علی شفیعی نادری، پاملا برگر

چکیده

Growth is an important heritable economic trait for dromedaries and necessary for planning a successful breeding program. Until now, genome-wide association studies (GWAS) and QTLmapping have identified significant single nucleotide polymorphisms (SNPs) associated with growth in domestic animals, but in dromedaries, the number of studies is very low. This project aimed to find biological themes affecting growth in dromedaries. In the first step, 99 candidate SNPs were chosen from a previously established set of SNPs associated with body weight, gain, and birth weight in Iranian dromedaries. Next, 0.5 kb upstream and downstream of each candidate SNP were selected from NCBI (assembly accession: GCA_000803125.3). The annotation of fragments with candidate SNPs regarding the reference genome was retrieved using the Blast2GO tool. Candidate SNPs associated with growth were mapped to 22 genes, and 25 significant biological themes were identified to be related to growth in dromedaries. The main biological functions included calcium ion binding, protein binding, DNA-binding transcription factor activity, protein kinase activity, tropomyosin binding, myosin complex, actin-binding, ATP binding, receptor signaling pathway via JAK-STAT, and cytokine activity. EFCAB5, MTIF2, MYO3A, TBX15, IFNL3, PREX1, and TMOD3 genes are candidates for improving growth in camel breeding programs.