Research Info

Title
Gene-Set Enrichment Analysis for Identifying Genes and Biological Activities Associated with Growth Traits in Dromedaries
Type Article
Keywords
growth; biological theme; gene ontology; dromedaries
Abstract
Growth is an important heritable economic trait for dromedaries and necessary for planning a successful breeding program. Until now, genome-wide association studies (GWAS) and QTLmapping have identified significant single nucleotide polymorphisms (SNPs) associated with growth in domestic animals, but in dromedaries, the number of studies is very low. This project aimed to find biological themes affecting growth in dromedaries. In the first step, 99 candidate SNPs were chosen from a previously established set of SNPs associated with body weight, gain, and birth weight in Iranian dromedaries. Next, 0.5 kb upstream and downstream of each candidate SNP were selected from NCBI (assembly accession: GCA_000803125.3). The annotation of fragments with candidate SNPs regarding the reference genome was retrieved using the Blast2GO tool. Candidate SNPs associated with growth were mapped to 22 genes, and 25 significant biological themes were identified to be related to growth in dromedaries. The main biological functions included calcium ion binding, protein binding, DNA-binding transcription factor activity, protein kinase activity, tropomyosin binding, myosin complex, actin-binding, ATP binding, receptor signaling pathway via JAK-STAT, and cytokine activity. EFCAB5, MTIF2, MYO3A, TBX15, IFNL3, PREX1, and TMOD3 genes are candidates for improving growth in camel breeding programs.
Researchers Morteza Bitaraf Sani (First researcher)
zahra roudbari (Second researcher)
Omid Karimi (Third researcher)
Mohammad Hossein Banabazi (Fourth researcher)
Saeid Esmaeilkhanian (Fifth researcher)
Nader Asadzadeh (Not in first six researchers)
Javad Zare Harofte (Not in first six researchers)
Ali Shafei Naderi (Not in first six researchers)
Pamela Anna Burger (Not in first six researchers)